| ALTERNATIVE SPLICING DATABASES | ||
| ASAP | ECgene | MAASE |
| ASD | EDAS | ProSplicer |
| ASDB | ExInt | SpliceDB |
| ASHESdb | GeneNest | SpliceInfo |
| AsMAMDB | HS3D | SpliceNest |
| ASP | IGMS |   |
| EASED | ISIS |   |
| PROMOTEUR PREDICTION | ||
| Dragon | NNPP 2.2 | PromoterSer |
| FirstEF | Promoter Scan | RNA Analyser |
| TRANSCRIPTION FACTOR BINDING SITES | ||
| Cister | Signal Scan (IMD) | TRRD |
| Dragon | TFSEARCH |   |
| Signal Scan | TFSitescan |   |
| UTR ANALYSIS | ||
| ARED 2.0 | ERPIN | Polyadq |
| AUG EVALUATOR | LEADER RNA | Transterm |
| Dragon | PolyA DB | UTRessource |
| SPLICING SITE SCORING | ||
| BDGP | FSplice | Gene Splicer |
| SPLICING FACTOR BINDING SITES | ||
| ESEfinder | RESCUE-ESE | FAS-ESS |