Find a gene by keyword

You can use several type of keyword to retrieve your gene:

• EnsEMBL description or part of the EnsEMBL description of the gene (e.g. Programmed cell death protein 6)
• Accession number of the gene (e.g. AB033060)
• FAST DB ID of the gene (e.g. 709)
• Official name of the gene (e.g. aryl-hydrocarbon receptor repressor)
• Official symbol of the gene (e.g. AHRR)
• Previous name(s) of the gene (e.g. aryl hydrocarbon receptor regulator)
• Previous symbol(s) of the gene (e.g. AHH, AHHR)
• Aliase(s) of the gene (e.g. KIAA1234)
• OMIM ID (e.g. 606517)
• REFSEQ IF (e.g. NM_020731)
• UNIPROT ID (e.g. Q9ULI6)
• ENTREZ GENE ID (e.g. 57491)
• Chromosome (e.g. 5p15.3)
• Accession number of one of the transcript of the gene (e.g. BC012384)
• EnsEMBL STABLE ID of the gene (e.g. ENSG00000063438)
• EnsEMBL STABLE ID of one of the transcript of the gene (e.g. ENST00000316418)

Find a gene by sequence

The longest input sequence is, the more specific result you will have (all results with an e-value less than 0.01 will be provided)
If you check "Align your sequence with the graphical gene representation", fast DB will show the graphical alignment of your sequence with the graphical representation of the gene. The "in silico PCR" will be rebuilt including your sequence with all the sequences of the gene transcripts.


Multiple queries search

You can upload a file with a list of EnsEMBL STABLE ID, one per line, for example:

ENSG00000198888
ENSG00000198763
ENSG00000198804
ENSG00000198712
ENSG00000198899
ENSG00000198938
ENSG00000198886
ENSG00000198786
ENSG00000198727
ENSG00000187537
ENSG00000136319
ENSG00000100814


Legend of the multi-alignment of CDSs

	exons
	CDSs from CCDS
*	STOP codon
M	Methionin
X	amino acid encoded by two exons (exon containing X gives 2 of the 3 codon nucleotides)

Legend of the transcripts view

	exons
	introns
	promoter/terminal sequences
	internal exon deletion
	retained intron
	first exons
	terminal exons
	most frequent splicing
	alternative splicing
	CDSs from CCDS
	predicted ORFs
ORF ORF	predicted ORF
NMD NMD	transcript targeted for NMD
* |	STOP codon
M |	Methionin
	exon with at least one microRNA/transcript interaction site

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